PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944662
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-X1
Protein Properties Length: 323aa    MW: 34672.1 Da    PI: 7.7508
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944662genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.52.1e-062542118
   zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
               CG+H C+  CH+GpC++C
  462944662 25 CGNHACKDMCHPGPCGEC 42
               ****************** PP

2zf-NF-X123.61.1e-0783100118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG H+C+ +CHeG+CppC
  462944662  83 CGVHRCKVTCHEGECPPC 100
                ****************** PP

3zf-NF-X122.13.4e-07178196119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+Cq lCH G CppC 
  462944662 178 CGQHTCQLLCHSGHCPPCL 196
                ******************6 PP

4zf-NF-X117.21.1e-05288303116
   zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                CG+H C ++CH+ pC+
  462944662 288 CGMHACARTCHPAPCD 303
                ***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060086.32E-61558No hitNo description
PfamPF014222.7E-42542IPR000967Zinc finger, NF-X1-type
SMARTSM004387.0E-42544IPR000967Zinc finger, NF-X1-type
CDDcd060081.13E-873120No hitNo description
PfamPF014221.4E-683100IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-483102IPR000967Zinc finger, NF-X1-type
CDDcd060084.92E-6168211No hitNo description
PfamPF014226.0E-6178195IPR000967Zinc finger, NF-X1-type
SMARTSM004387.3E-5178197IPR000967Zinc finger, NF-X1-type
PfamPF0142216235251IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34235253IPR000967Zinc finger, NF-X1-type
PfamPF014225.3E-4288303IPR000967Zinc finger, NF-X1-type
SMARTSM004380.036288323IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVKGKLSEDD GVFSCSEVCG HTLACGNHAC KDMCHPGPCG ECELMPGKVT TCHCGKTKLQ  60
ETRASCLDPI PTCDKVCDKY LPCGVHRCKV TCHEGECPPC LVRVEQRCRC SSSGRMVECY  120
MVSKEEFLCN KPCGRKKNCG RHRCSECCCP MSKPLALHED GNWDPHLCQL PCGKKLRCGQ  180
HTCQLLCHSG HCPPCLETIF TDLTCACGRT SIPPPQPCGT PTPSCPHKCS VPQPCGHPAS  240
HSCHFGDCPP CVVPVVRECI GGHVMLRNIP CGSKDIRCNQ PCGNNRQCGM HACARTCHPA  300
PCDQQPANGD ASSSSGGKAS CGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY591e-139NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLB8B0A00.0B8B0A0_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA021526-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.11e-123NF-X-like 1